Version 7 (modified by freerkvandijk, 11 years ago) (diff)



All source code can be downloaded at


Step 1 Obtain datasets

Download raw BGI FASTQ files from Grid or use the simulated files from Jeroen

Step 2 Install tools

You need to install the following tools and set up required index files.

Step 3 Configure pipeline

Edit to locate datasets and tools

Step 4 Generate pipeline

Run /src/ngsscriptgenerator/ to generate the pipeline scripts