Version 2 (modified by Leon Mei, 12 years ago) (diff)



All source code can be downloaded at


  • Step 1 Obtain datasets

Download raw BGI FASTQ files from Grid or use the simulated files from Jeroen

  • Step 2 Install tools
  • BWA
  • GATK
  • Picart
  • Step 3 Configure pipeline

Edit to locate datasets and tools

  • Step 4 Generate pipeline

Run /src/ngsscriptgenerator/ to generate the pipeline scripts