Changes between Version 6 and Version 7 of DataManagement/SftpServer

Timestamp:

Aug 18, 2011 9:20:08 PM (13 years ago)

Author:

laurent

Comment:

--

DataManagement/SftpServer

@@ -4 +4 @@
 == Access: ==
 There 2 kind of access to the gonl SFTP server: ''personal access'' and ''gonlsv access''. Personal access gives access to almost all data, while gonlsv only gives access to a limited subset of the data. For gonlsv users who need access to specific data that is not available with their privileges, you should send an email to someone at UMCG to request the data; upon approval, access to the data will be provided.
-=== /target/gpfs2/gcc/groups/gonl/sftp/ ===
-Root of the SFTP.
 
-=== /target/gpfs2/gcc/groups/gonl/sftp/A4 ===
+=== gonlsv users ===
+==== /target/gpfs2/gcc/groups/gonl/sftp/ ====
+Root of the SFTP for people using the gonlsv limited account.
+
+==== '''/target/gpfs2/gcc/groups/gonl/sftp/A4''' ====
 Contains all the information about the A4 test trio, including all the raw and aligned data.
 
-=== /target/gpfs2/gcc/groups/gonl/sftp/BGI ===
-Contains all the data coming from BGI, including their variant calls. The data is organized by batch in the batchX subfolders. Each of the subfolders typically contains the following:
+==== /target/gpfs2/gcc/groups/gonl/sftp/pilot ====
+Data fro the pilot, including aligned BAMs and SNPs.
+
+==== /target/gpfs2/gcc/groups/gonl/sftp/resources ====
+GoNL resources tarball (Thanks Freerk!)
+
+==== /target/gpfs2/gcc/groups/gonl/sftp/upload ====
+This is where everyone has write permissions. This directory should be used for data exchange.
+
+=== personal users ===
+
+==== /target/gpfs2/gcc/groups/gonl/ ====
+Root of the gonl data.
+
+==== /target/gpfs2/gcc/groups/gonl/projects ====
+Root of the gonl projects. This is where all the raw data and results live. They are organized into projects:
+
+ * batch1..6 are alignment projects of the different batches
+
+
+==== /target/gpfs2/gcc/groups/gonl/projects/bgi ====
+Contains all the data coming from BGI, including their variant calls.  The data is organized by batch in the batchX subfolders. Each of the  subfolders typically contains the following:
 
  * batchX/
-   * A set of compressed files containing the plain text data and md5 files for downloading purpose. These are named as follows: timestamp.BGI.batchX.data_type.hg1X.data_format.tar.bz2. All plain text data should be available as a compressed file, including but not limited to: CNV, !InDel, !InDel annotations, SNP, SNP annotation. Some of these are available in multiple formats; see BGI data page for more explanation about the BGI data and its formats. ** md5 checksum files for all files.
+   * A  set of compressed files containing the plain text data and md5 files  for downloading purpose. These are named as follows:  timestamp.BGI.batchX.data_type.hg1X.data_format.tar.bz2. All plain text  data should be available as a compressed file, including but not limited  to: CNV, !InDel, !InDel annotations, SNP, SNP annotation. Some of these  are available in multiple formats; see BGI data page for more  explanation about the BGI data and its formats. ** md5 checksum files  for all files.
 
  * batchX/bam OR batchX/alignment
@@ -46 +68 @@
 
  * Unless specified otherwise, all data is aligned on hg19
- * Some of the folder/filenames are inconsistent from one batch to the other. This is because the original names as found on the BGI HD have been kept.
-=== /target/gpfs2/gcc/groups/gonl/sftp/pilot ===
-Data fro the pilot, including aligned BAMs and SNPs.
-
-=== /target/gpfs2/gcc/groups/gonl/sftp/resources ===
-GoNL resources tarball (Thanks Freerk!)
-
-=== /target/gpfs2/gcc/groups/gonl/sftp/upload ===
-This is where everyone has write permissions. This directory should be used for data exchange.
+ * Some  of the folder/filenames are inconsistent from one batch to the other.  This is because the original names as found on the BGI HD have been  kept.