| 44 | | * bgi |
| 45 | | * batchX: contains all the analysis data from BGI. Please see...for more information |
| | 44 | * /bgi |
| | 45 | * /batchX |
| | 46 | * A set of compressed files containing the plain text data and md5 files for downloading purpose. These are named as follows: timestamp.BGI.batchX.data_type.hg1X.data_format.tar.bz2. All plain text data should be available as a compressed file, including but not limited to: CNV, !InDel, !InDel annotations, SNP, SNP annotation. Some of these are available in multiple formats; see [wiki:BGIDatasets BGI data] page for more explanation about the BGI data and its formats.md5 checksum files is also available for all files. |
| | 47 | * batchX/bam OR batchX/alignment |
| | 48 | * The BAM files aligned by BGI |
| | 49 | * batchX/CNV |
| | 50 | * CNVs in CNV Detector format. If you want to download for all samples, please download the compressed archive from batchX/ |
| | 51 | * batchX/indel |
| | 52 | * !InDels in samtools pileup format. If you want to download for all samples, please download the compressed archive from batchX/ |
| | 53 | * batchX/indel_annotation |
| | 54 | * Indels annotations in GFF format. If you want to download for all samples, please download the compressed archive from batchX/ |
| | 55 | * batchX/SNP |
| | 56 | * SNP in SOAPsnp format. If you want to download for all samples, please download the compressed archive from batchX/ |
| | 57 | * batchX/SNP_annotation |
| | 58 | * SNP annotations in GFF format. If you want to download for all samples, please download the compressed archive from batchX/ |
| | 59 | * batchX/vcf_format/CNV |
| | 60 | * CNV in VCF format. If you want to download for all samples, please download the compressed archive from batchX/ |
| | 61 | * batchX/vcf_format/indel |
| | 62 | * Indel in VCF format. If you want to download for all samples, please download the compressed archive from batchX/ |
| | 63 | * batchX/vcf_format/SNP |
| | 64 | * SNP in VCF format. If you want to download for all samples, please download the compressed archive from batchX/ |
