Changes between Version 1 and Version 2 of BigComputeTemplates


Ignore:
Timestamp:
May 19, 2011 10:57:23 AM (14 years ago)
Author:
Barbera van Schaik
Comment:

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Legend:

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  • BigComputeTemplates

    v1 v2  
    1717* pe06-realign.ftl (!ReAlign, lfn://lfc.grid.sara.nl:5010/grid/vlemed/AMC-e-BioScience/Sequence_WF/gvnl/Workflows/ReAlign.gwendia)
    1818* pe07-fixmates.ftl (!FixMates, lfn://lfc.grid.sara.nl:5010/grid/vlemed/AMC-e-BioScience/Sequence_WF/gvnl/Workflows/FixMates.gwendia)
    19 * pe08-covariates-before.ftl (!GatkCovariates, lfn://lfc.grid.sara.nl:5010/grid/vlemed/AMC-e-BioScience/Sequence_WF/gvnl/Workflows/GatkCovariates.gwendia)
    20 * pe09-recalibrate.ftl (!GatkRecalibrate, lfn://lfc.grid.sara.nl:5010/grid/vlemed/AMC-e-BioScience/Sequence_WF/gvnl/Workflows/GatkRecalibrate.gwendia)
    21 * pe10-sam-sort.ftl (!SamSort, lfn://lfc.grid.sara.nl:5010/grid/vlemed/AMC-e-BioScience/Sequence_WF/gvnl/Workflows/SamSort.gwendia)
    22 * pe11-covariates-after.ftl (!GatkCovariates, lfn://lfc.grid.sara.nl:5010/grid/vlemed/AMC-e-BioScience/Sequence_WF/gvnl/Workflows/GatkCovariates.gwendia)
    23 * pe12-analyze-covariates.ftl (!GatkAnalyzeCovariates, lfn://lfc.grid.sara.nl:5010/grid/vlemed/AMC-e-BioScience/Sequence_WF/gvnl/Workflows/GatkAnalyzeCovariates.gwendia)
     19* pe08-covariates-before.ftl (!GatkRecalibrateAllSteps, lfn://lfc.grid.sara.nl:5010/grid/vlemed/AMC-e-BioScience/Sequence_WF/gvnl/Workflows/GatkRecalibrateAllSteps.gwendia)
     20* pe09-recalibrate.ftl (!GatkRecalibrateAllSteps, lfn://lfc.grid.sara.nl:5010/grid/vlemed/AMC-e-BioScience/Sequence_WF/gvnl/Workflows/GatkRecalibrateAllSteps.gwendia)
     21* pe10-sam-sort.ftl (!GatkRecalibrateAllSteps, lfn://lfc.grid.sara.nl:5010/grid/vlemed/AMC-e-BioScience/Sequence_WF/gvnl/Workflows/GatkRecalibrateAllSteps.gwendia)
     22* pe11-covariates-after.ftl (!GatkRecalibrateAllSteps, lfn://lfc.grid.sara.nl:5010/grid/vlemed/AMC-e-BioScience/Sequence_WF/gvnl/Workflows/GatkRecalibrateAllSteps.gwendia)
     23* pe12-analyze-covariates.ftl (!GatkRecalibrateAllSteps, lfn://lfc.grid.sara.nl:5010/grid/vlemed/AMC-e-BioScience/Sequence_WF/gvnl/Workflows/GatkRecalibrateAllSteps.gwendia)
    2424
    2525=== Merge bam per sample and perform SNP and indel calling ===