Grid Data Infrastructure

Check out first Recommended BIOS datasets for downstream analysis - One page overview of all prepared BIOS datasets (not raw data)

Power users

All decision on infrastructure are confirmed with and agreed by the following power users

• RNA-seq: 't Hoen and Franke
• 450k methylation: Franke and Heijmans
• Phenotypes: Franke and Heijmans
• Genotypes: Franke and Heijmans

Infrastructure and access

• Obtaining access - Obtaining access to the grid infrastructure.
• SRM file system structure - Specifying the policy of SRM and where to store your files.
• Information about file backups on SRM - Specifying which files need to be backed up and where.
• Using EGA to archive datasets - How to upload BIOS data to EGA

Experimental raw data protocols

Here are specification of location of raw BIOS data and their file format.

• RNASeq data - Protocols concerning raw RNASeq data.
• Methylation data - Protocols concerning raw methylation data.
• Genotype data - Protocols concerning raw genotype data.
• Phenotype data - Protocols concerning raw phenotype data.

Reference and testing data

• Reference and annotation - Location and descriptions.