Changes between Version 7 and Version 8 of gene_exon_transcript_count

Timestamp:

Nov 7, 2013 10:35:09 AM (11 years ago)

Author:

pacthoen

Comment:

--

gene_exon_transcript_count

@@ -11 +11 @@
 From these the median Spearman correlation for each sample to each other sample was calculated. This is also called the D-statistic. The D-statistics (ranked from low to high) can be found in this file [raw-attachment:Median_pairwise_spearman_correlations_complete_gene_data_run_1.txt Median Spearman correlations][[BR]]
 
-[raw-attachment:Median_pairwise_spearman_correlations_by_flowcell_complete_gene_data_run_1.pdf Boxplot of median Spearman correlations grouped by flowcell] (Martijn Vermaat)
+[raw-attachment:Median_pairwise_spearman_correlations_by_flowcell_complete_gene_data_run_1.pdf Boxplot of median Spearman correlations grouped by flowcell] (Martijn Vermaat)[[BR]]
+
+[raw-attachment:Dstat_biobank_boxplot.pdf] Boxplot of median Spearman correlations grouped by biobank] [[BR]]
+
+After removing the two samples with very low Spearman correlations to all other samples, the distance matrix was calculated (1 - correlation matrix), and a two-dimensional MDS plot was created using the R function cmdscale. [raw-attachment:mdsplot_filt_colored_biobank.pdf This is the resulting mdsplot]. The plot was colored according to the following color scheme: [[BR]]
+"LL"  - gold[[BR]]
+"RS"  - blue[[BR]]
+"CODAM" - orange[[BR]]
+"LLS" - pink[[BR]]
+"Amsterdam" - darkred[[BR]]
+
+