Changes between Version 10 and Version 11 of Test imputation pipeline
- Timestamp:
- Feb 17, 2012 1:46:32 PM (13 years ago)
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Test imputation pipeline
v10 v11 34 34 -n 5000 0 35 35 }}} 36 The study panel is an artificial genotype dataset. Created by37 36 * This command requires 80G of memory. 38 37 * Filter the generated gen files with the SNPs from the hap550 file. According to the documentation of hapgen2 you can specify a list of SNPs and limit the generation of the files in these SNPs (the -t option). I didn't use this option and I filtered the generated data afterwards to the positions of hap550 in order to check if the positions indeed matched. Some stats:
