Changes between Version 55 and Version 56 of SnpCallingPipeline


Ignore:
Timestamp:
Nov 12, 2010 2:47:48 PM (14 years ago)
Author:
freerkvandijk
Comment:

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  • SnpCallingPipeline

    v55 v56  
    9393
    9494First:
    95 * Recode workflow 2 to work per genome instead of per chromosome and test - Freerk
    96 * Run on pilot data (6) to evaluate timing and concurrency issues (can 6 run on one node?) - Freerk
     95* Recode workflow 2 to work per genome instead of per chromosome and test - Freerk (done) -> workflow3 still needs to be done
     96* Run on pilot data (6) to evaluate timing and concurrency issues (can 6 run on one node?) - Freerk (in progress)
    9797* Complete analysis of data (60) until including merge to sample.aligned.bam - Freerk
    9898* QC pipeline - Can we get Jeroen and Yurii involved here
    9999   * UnifiedGenotyper without realign - Freerk
    100100   * GATK variant eval to make venn diagrams
    101    * Contact Yurii for this; Let Jeroen take charge?
     101   * Contact Yurii for this; Let Jeroen take charge? (done) -> Jeroen doing QC stuff
    102102* Share data with Grid following plan Silvia - Freerk
    103 * Contact BGI for sample list - Morris
     103* Contact BGI for sample list - Morris (done)
    104104* Put report on FTP - Ger,Freerk
    105105