Changes between Version 25 and Version 26 of SnpCallingPipeline

Timestamp:

Oct 16, 2010 6:14:27 PM (14 years ago)

Author:

Morris Swertz

Comment:

--

SnpCallingPipeline

@@ -38 +38 @@
                 "flowcell_lane.2.fq.gz" -> align2 -> alignPE -> MarkDuplicates -> RealignIndelsAndFixMates -> "flowcell_lane.aligned.bam"
                 "realign.intervals" -> RealignIndelsAndFixMates   
-                label = "Per Lane*Chromosome (750*3*24) ";
+                label = "Per Lane*Chromosome (750*3*24=54k) ";
         }
 
@@ -45 +45 @@
                 color=lightgrey;
                 node [style=filled,color=white];
-                "flowcell_lane.aligned.bam" -> Merge -> "sample.aligned.bam" -> RealignIndelsAndFixMates2 
+                "flowcell_lane.aligned.bam" -> Merge -> "sample.aligned.bam" -> "IndelRealigner & FixMateInformation"
                 "flowcell_lane2.aligned.bam" -> Merge
                 "flowcell_lane3.aligned.bam" -> Merge
-                RealignIndelsAndFixMates2 -> IndelGenotyperV2 -> FilterSingleCalls -> UnifiedGenotyper -> Filtration -> VariantEval -> "QC reports"
+                "IndelRealigner & FixMateInformation" -> IndelGenotyperV2 -> FilterSingleCalls -> UnifiedGenotyper -> Filtration -> VariantEval -> "QC reports"
 Filtration -> VCF
-                label = "Per Sample*Chromosome (750*24)";
+                label = "Per Sample*Chromosome (750*24=18k)";
         }