Changes between Version 21 and Version 22 of SnpAnnotationPipeline


Ignore:
Timestamp:
Jan 5, 2011 10:24:36 AM (14 years ago)
Author:
a.kanterakis
Comment:

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  • SnpAnnotationPipeline

    v21 v22  
    498498 * About ANNOVAR: http://www.openbioinformatics.org/annovar/
    499499 * Download ANNOVAR http://www.openbioinformatics.org/annovar/download/annovar.latest.tar.gz more information: http://www.openbioinformatics.org/annovar/annovar_download.html
     500 * ANNOVAR is already installed and configured in gbicdev: /data/home/data/alex/ANNOVAR/
     501 * Download (for both hg18 and hg18 release) annotation files (most of them from UCSC):
     502    * Gene based: http://www.openbioinformatics.org/annovar/annovar_gene.html
     503    * Region based: http://www.openbioinformatics.org/annovar/annovar_region.html
     504    * Filter based: http://www.openbioinformatics.org/annovar/annovar_filter.html
     505    * These files are have already been downloaded in gbicdev: /data/home/data/alex/ANNOVAR/humandb_hg18/ , /data/home/data/alex/ANNOVAR/humandb_hg19/
    500506= Related work =
    501507