This page describes the Imputation pipelines developed by the GoNL - Impute team. Please contribute. For help with trac wiki formatting: ​http://trac.edgewall.org/wiki/WikiFormatting
All scripts presented here are located in our SVN repository: ​http://www.bbmriwiki.nl/svn/imputation

Contributors and Teams

• UMC Groningen: Alexandros Kanterakis alexandros.kanterakis@…

Study data

Reference data

Pre processing

Quality metrics

Complete pipelines

Results

References

See also

• An older version of the imputation pipeline developed mainly by Harm-Jan and Lude Franke: ImputationPipeline_old it uses the ImputationTool for study / reference normalization.
• SVN repository: ​http://www.bbmriwiki.nl/svn/imputation
• ​http://gettinggeneticsdone.blogspot.com/2010/04/probabel-r-package-for-gwas-data.html ProbABEL - R package for GWAS data imputation. ​http://www.biomedcentral.com/1471-2105/11/134 ​http://mga.bionet.nsc.ru/~yurii/ABEL/GenABEL/ an R library for Genome-wide association analysis.