This page describes the Imputation pipelines developed by the GoNL - Impute team. Please contribute. For help with trac wiki formatting: http://trac.edgewall.org/wiki/WikiFormatting [[br]]
All scripts presented here are located in our SVN repository: http://www.bbmriwiki.nl/svn/imputation [[br]]
Minutes of our Team Calls: [[http://www.bbmriwiki.nl/wiki/Imputations/Minutes]]

== Contributors and Teams ==
 * UMC Groningen: Alexandros Kanterakis alexandros.kanterakis@gmail.com
== Study data ==
== Reference data ==
== Pre processing ==
== Quality metrics ==
== Complete pipelines ==
== Results ==
== References ==
== See also ==
* An older version of the imputation pipeline developed mainly by Harm-Jan and Lude Franke: [[ImputationPipeline_old]] it uses the [[ImputationTool]] for study / reference normalization. 
* SVN repository: http://www.bbmriwiki.nl/svn/imputation
* http://gettinggeneticsdone.blogspot.com/2010/04/probabel-r-package-for-gwas-data.html ProbABEL - R package for GWAS data imputation.  http://www.biomedcentral.com/1471-2105/11/134 http://mga.bionet.nsc.ru/~yurii/ABEL/GenABEL/ an R library for Genome-wide association analysis.
* Impute2: http://mathgen.stats.ox.ac.uk/impute/impute_v2.html
* http://gettinggeneticsdone.blogspot.com/2010/04/probabel-r-package-for-gwas-data.html ProbABEL - R package for GWAS data imputation.  http://www.biomedcentral.com/1471-2105/11/134 http://mga.bionet.nsc.ru/~yurii/ABEL/GenABEL/ an R library for Genome-wide association analysis.