Changes between Version 37 and Version 38 of ImputationPipeline


Ignore:
Timestamp:
Dec 6, 2011 12:09:42 PM (13 years ago)
Author:
a.kanterakis
Comment:

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  • ImputationPipeline

    v37 v38  
    2727 * '''SNPs in study with CR < CR_minimum''': SNPs with Call Rate < CR_minimum set
    2828 * '''SNPs that differ in Allele Frequencies''': SNPs with difference in AF between reference and study over CR_minimum set.
     29[[BR]]
     30Options:
     31 * input_beagle_study : The study in beagle format
     32 * input_beagle_reference : The reference in beagle format
     33 * input_markers_study : The study's markers in beagle format
     34 * input_markers_reference : The reference's markers in beagle format
     35 * output_beagle_study : The Normalized output of the study (Use this as "study" for imputation)
     36 * output_beagle_reference : The Normalized output of the reference (Normally you will not use this file)
     37 * output_markers_study : The Markers of the normalized study
     38 * output_markers_reference : The Markers of the normalized reference
     39 * output_log_filename : the log filename
    2940== Imputation software ==
    3041 * Impute2