Changes between Version 9 and Version 10 of ImputationPipeline


Ignore:
Timestamp:
Nov 23, 2010 10:52:35 AM (11 years ago)
Author:
a.kanterakis
Comment:

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  • ImputationPipeline

    v9 v10  
    123123
    124124==== Parameters ====
     125 * Path to plink executable (example: /Users/alexandroskanterakis/Tools/plink/plink-1.07-mac-intel/plink)
     126 * Path to BED, BIM, FAM file (example: /Users/alexandroskanterakis/Data/Finnish_cohort/CD_Finnuncorr.maf05)
     127 * Filename of exported PED file (example: /Users/alexandroskanterakis/Data/Finnish_cohort/CD_Finnuncorr.maf05.ped)
     128 * Filename of exported MAP file (example: /Users/alexandroskanterakis/Data/Finnish_cohort/CD_Finnuncorr.maf05.map)
    125129
    126  * Path to plink executable (example: /Users/alexandroskanterakis/Tools/plink/plink-1.07-mac-intel/plink) 
    127  * Path to BED, BIM, FAM file (example: /Users/alexandroskanterakis/Data/Finnish_cohort/CD_Finnuncorr.maf05) 
    128  * Filename of exported PED file (example: /Users/alexandroskanterakis/Data/Finnish_cohort/CD_Finnuncorr.maf05.ped) 
    129  * Filename of exported MAP file (example: /Users/alexandroskanterakis/Data/Finnish_cohort/CD_Finnuncorr.maf05.map) 
     130==== Example of usage: ====
     131
     132{{{
     133#!div style="font-size: 80%"
     134Code highlighting:
     135  {{{#!python
     136ConvertBedBimFamToPedMap(
     137
     138    plink_path="/Users/alexandroskanterakis/Tools/plink/plink-1.07-mac-intel/plink",
     139    bbf_path="/Users/alexandroskanterakis/Data/Finnish_cohort/CD_Finnuncorr.maf05", 
     140    ped_path="/Users/alexandroskanterakis/Data/Finnish_cohort/CD_Finnuncorr.maf05.ped",
     141    map_path="/Users/alexandroskanterakis/Data/Finnish_cohort/CD_Finnuncorr.maf05.map")
     142  }}}
     143}}}
     144
    130145== BEABLE pipeline ==
    131146