Changes between Version 2 and Version 3 of DataManagement

Timestamp:

Feb 8, 2011 3:51:56 PM (14 years ago)

Author:

laurent

Comment:

--

DataManagement

@@ -50 +50 @@
  * Lane-level files should be named using: ''step_id.step_name.sample_name.lane_name.genome_build.time_stamp.extension''
    * Ex: A bam file for the lane FC20005_L1 of the sample A2a produced by the step pe03 (step 3 of paired-end alignment) with the tool BWA sampe using genome build human_g1k_v37 on a  run that begun on February 1st 2011 at 12:00 should be named: ''pe03.bwa_sampe.A2a.FC20005_L1.human_g1k_v37.2011_02_12_00.bam''
- * Log file names should correspond to their output counterparts and have the .log extension. 
+ * Log file names should correspond to their output counterparts and have the .log extension.
    * Ex: log file for the vcf sample-level step above should be: ''vc02.unified_genotyper.A2a.human_g1k_v37.2011_02_01_12_00.log''
    * Ex: log file for the bam lane-level step above should be: ''pe03.bwa_sampe.A2a.FC20005_L1.human_g1k_v37.2011_02_12_00.log''
@@ -65 +65 @@
 
 === Molgenis ===
-The Molgenis
+The Molgenis platform will be used to provide a more advanced and general view of the status of the pipeline runs (including different views, sorting, etc.) The current status is:
+
+ * Molgenis instance created with proposed model
+ * Scripts for insertion under development