Changes between Version 10 and Version 11 of BigCompute


Ignore:
Timestamp:
Dec 8, 2010 4:31:22 PM (12 years ago)
Author:
Barbera van Schaik
Comment:

Update implementation of pipeline on grid

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  • BigCompute

    v10 v11  
    3535* Annovar (currently working on the implementation). This is a pipeline to annotate variants (gene, dbsnp, hapmap, 1000g, conservation, etc)
    3636
     37'''Implemented components of the Groningen pipeline'''
     38''A more detailed description will follow later''
     39* BwaIllumina (''test phase'') - pe00-bwa-align-pair1.ftl, pe01-bwa-align-pair2.ftl, pe02-bwa-sampe.ftl, pe03-sam-to-bam.ftl, pe04-sam-sort.ftl
     40* MarkDuplicates (''test phase'') - pe05-mark-duplicates.ftl
     41* PicardQC (''test phase'') - pe04b-picardQC.ftl
     42
    3743'''To be implemented'''
    38 * BWA for paired end reads
    3944* The components of the Groningen pipeline that not implemented as a workflow component yet
    4045* Pindel