Changes between Version 2 and Version 3 of BIOS_RSC_production


Ignore:
Timestamp:
Jul 13, 2021 3:00:04 PM (3 years ago)
Author:
Leon Mei
Comment:

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  • BIOS_RSC_production

    v2 v3  
    2525= Step 4: Configuration of your account at Research Cloud =
    2626* Log into https://portal.live.surfresearchcloud.nl/ using your institutional credential
     27* If you don't have budget, you can click "Request a new wallet" to apply for more resources. You can put "SRC-BBMRI" as Subtitle and "EINF-483" as Existing contract.
    2728* Go to "Profile" tab using the navigation bar at the top of the page.
    2829 * Set up time based password in the "Profile" section by clicking the "more option" button. [https://researchclouddocs.readthedocs.io/en/latest/account_setup.html#totp more details].
    2930 * Link Researchdrive in the "Collaborative organisations" section by by clicking "more option" button. [https://servicedesk.surfsara.nl/wiki/display/WIKI/Connect+Research+Drive more details] 
     31* Once your request to budget/new wallet get approved, you can request your user specific persistent storage and fixed IP address. This storage and IP resource can be used when you create a new workspace.
    3032* Additional documentations about RSC: https://researchclouddocs.readthedocs.io/en/latest/index.html
    3133
     
    3335* In the main dashboard of Research Cloud, click "Create new workspace" and follow the instructions to configure and start a new workspace.
    3436 * '''And about the expiration date, please try to keep a cost efficient timeline. If the VM is running without doing any jobs, it is a waste of our project resource!!!'''
    35 * If you don't have budget, you can click "Request a new wallet" to apply for more resources. You can put "SRC-BBMRI" as Subtitle and "EINF-483" as Existing contract.
    3637* As a member of the same CO, you can also access a running workspace created by another member in the same CO provided the owner agrees.
    3738* After you log into the Rstudio UI, you can run the following commands to verify if you have proper access to the BBMRIomics data.
     
    5051
    5152= (optional) Step 7: ssh access =
    52 For more advanced users who would like to access the terminal of a workspace. You can "ssh <user_name>@<IP>" to the workspace where <user_name> is the same as defined in your authenticator app and the <IP> address is shown in the "Workspace Details". You can "sudo su" to become a sudoer on the workspace in order to install necessary programs. But be aware that this workspace is not persistent and all programs you installed will be gone when this workspace is deleted. So it is best to save your shell installation script/Ansible playbook/bioconda environment file in a persistent location (such as RD) so that it is easy to reinstall all necessary dependencies for future uses.
     53For more advanced users who would like to access the terminal of a workspace. You can "ssh <user_name>@<IP>" to the workspace where <user_name> is the same as defined in your authenticator app and the <IP> address is shown in the "Workspace Details". You can "sudo su" to become a sudoer on the workspace in order to install necessary programs.
    5354
    5455= [wiki:BIOS_RSC_guide Detailed user guide to create a BBMRIomics workspace with screenshots ] =