Changes between Version 3 and Version 4 of BIOS_PreparedData


Ignore:
Timestamp:
Sep 26, 2016 1:56:36 PM (8 years ago)
Author:
jamverlouw
Comment:

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  • BIOS_PreparedData

    v3 v4  
    2626=== Data available ===
    2727
    28 Raw methylation data, idat-files, are available for all samples currently (01-08-2015) generated within the BIOS project. Sample swaps detected by !MixupMapper (http://bioinformatics.oxfordjournals.org/content/27/15/2104) have been corrected. Detection of bad quality samples or runs can be performed using !MethylAid (http://bioinformatics.oxfordjournals.org/content/30/23/3435) the results are available at http://shiny.bioexp.nl/BIOS. Rdata-files have been generated for each biobank and a combined file for all biobanks containing !SummarizedData-objects with functional normalized beta values sample and feature annotation. QC has been perform using !MethylAid.
     28Prepared data files are available on the VM. Follow [http://bios-vm.bbmrirp3-lumc.vm.surfsara.nl/BIOSRutils/README.html#prepared-datasets this link] for instructions on how to use them.
    2929
    3030=== Location on VM ===