| | 1 | = rp3_rna_run_20131004 5ddcae7 = |
| | 2 | |
| | 3 | This are the samples associated with freeze 1. |
| | 4 | |
| | 5 | == Sample count == |
| | 6 | 2270 samples + 30 redos + 30 merged originals_redos |
| | 7 | |
| | 8 | == Errors == |
| | 9 | For 64 samples the pipeline was rerun due to missing files (Mainly BAM), see [http://www.bbmriwiki.nl/wiki/BIOS_Pipeline/6d401ed 6d401ed] for these. |
| | 10 | |
| | 11 | == Summarized output files: == |
| | 12 | |
| | 13 | * JSON database dump of run database: srm://srm.grid.sara.nl/pnfs/grid.sara.nl/data/bbmri.nl/RP3/production/summaries/run_1.json |
| | 14 | |
| | 15 | * Tab-delimited file of QC values (contains all sample statistics from run database & sample database): srm://srm.grid.sara.nl/pnfs/grid.sara.nl/data/bbmri.nl/RP3/production/summaries/run_1_stats.tsv |
| | 16 | |
| | 17 | * Gene counts of all samples: srm://srm.grid.sara.nl/pnfs/grid.sara.nl/data/bbmri.nl/RP3/production/summaries/run_1_gene_counts.tar.gz |
| | 18 | |
| | 19 | * Exon counts of all samples: srm://srm.grid.sara.nl/pnfs/grid.sara.nl/data/bbmri.nl/RP3/production/summaries/run_1_exon_counts.tar.gz |
| | 20 | |
| | 21 | * Transcript counts of all samples: srm://srm.grid.sara.nl/pnfs/grid.sara.nl/data/bbmri.nl/RP3/production/summaries/run_1_transript_counts.tar.gz |
