Changes between Version 1 and Version 2 of BIOS_FileBackups


Ignore:
Timestamp:
Sep 28, 2016 10:37:39 PM (8 years ago)
Author:
Leon Mei
Comment:

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Legend:

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  • BIOS_FileBackups

    v1 v2  
    1212== RNAseq ==
    1313====  Raw data from ErasmusMC ====
    14   * Files: <flowcell ID>-<lane ID>-<index ID>_R1.fq.gz, <flowcell ID>-<lane ID>-<index ID>_R2.fq.gz, <flowcell ID>-<lane ID>-<index ID>-remaining.tar.gz
     14  * Files: <flowcell ID>-<lane ID>-<index ID>_R1.fq.gz, <flowcell ID>-<lane ID>-<index ID>_R2.fq.gz
    1515  * Location
    16    * srm://srm.grid.sara.nl/pnfs/grid.sara.nl/data/bbmri.nl/backup/RP3/RNASeq
     16   * /pnfs/grid.sara.nl/data/bbmri.nl/backup/RP3/20140305/RNASeq/
    1717  * Backup log
    18    * 2014-01-21: 4888 files are backed up. only fastq files. 2444 samples? Adler checksum is verified but not md5.
     18   * xxx files are backed up. MD5 checksum are verified. From MDB.
    1919
    2020==== Results of standard analysis using LSG pipeline ====
    2121  * Files: *.exon.count, *.transcript.count, *.gene.count, *.sorted.bam, *.run.log.
    2222  * Location
    23   * Backup log
    24    *
     23   * Freeze 1 pipeline: srm://srm.grid.sara.nl/pnfs/grid.sara.nl/data/bbmri.nl/backup/RP3/20140305/production/5ddcae7/
    2524
    2625== Methylation ==
     
    2827  * Files: <biobank>_sample_sheet.csv, *.idat
    2928  * Location
    30    * srm://srm.grid.sara.nl/pnfs/grid.sara.nl/data/bbmri.nl/backup/RP3/IlluminaHumanMethylation450k/LL_sample_sheet.csv
    31    * srm://srm.grid.sara.nl/pnfs/grid.sara.nl/data/bbmri.nl/backup/RP3/IlluminaHumanMethylation450k/9285451044/9285451044_R03C02_Grn.i
     29   * /pnfs/grid.sara.nl/data/bbmri.nl/backup/RP3/20140305/IlluminaHumanMethylation450k/
    3230  * Backup log
     31   * xxx files are backed up. MD5 checksum are verified. From MDB.
    3332
    3433== Phenotype ==
     34  * Files: <biobank>-phen-20140123.txt
     35  * Location
     36   * /pnfs/grid.sara.nl/data/bbmri.nl/backup/RP3/20140305/Phenotypes/
     37
     38== Imputed Genotype ==
     39  * Location
     40   * /pnfs/grid.sara.nl/data/bbmri.nl/backup/RP3/20140305/GWAS_ImputationGoNLv4/
     41   * /pnfs/grid.sara.nl/data/bbmri.nl/backup/RP3/20140305/GWAS_ImputationGoNLv5/