Timeline



Oct 17, 2010:

12:06 PM SnpCallingPipeline edited by Morris Swertz
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12:04 PM Blog: First raw reads in; Freerk and Morris go to Boston to get GATK running edited by Morris Swertz

Oct 16, 2010:

4:41 PM SnpCallingPipeline edited by Morris Swertz
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4:36 PM SnpCallingPipeline edited by Morris Swertz
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4:33 PM SnpCallingPipeline edited by Morris Swertz
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4:24 PM SnpCallingPipeline edited by Morris Swertz
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4:21 PM SnpCallingPipeline edited by Morris Swertz
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4:20 PM SnpCallingPipeline edited by Morris Swertz
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4:18 PM SnpCallingPipeline edited by Morris Swertz
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4:17 PM SnpCallingPipeline edited by Morris Swertz
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4:16 PM SnpCallingPipeline edited by Morris Swertz
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4:14 PM SnpCallingPipeline edited by Morris Swertz
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4:07 PM SnpCallingPipeline edited by Morris Swertz
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4:06 PM SnpCallingPipeline edited by Morris Swertz
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4:02 PM SnpCallingPipeline edited by Morris Swertz
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4:01 PM SnpCallingPipeline edited by Morris Swertz
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3:59 PM SnpCallingPipeline edited by Morris Swertz
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3:53 PM SnpCallingPipeline edited by Morris Swertz
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3:50 PM SnpCallingPipeline edited by Morris Swertz
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3:48 PM SnpCallingPipeline edited by Morris Swertz
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3:47 PM SnpCallingPipeline edited by Morris Swertz
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3:46 PM SnpCallingPipeline edited by Morris Swertz
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Oct 14, 2010:

9:58 PM SnpCallingPipeline edited by Morris Swertz
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9:57 PM SnpCallingPipeline edited by Morris Swertz
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9:57 PM SnpCallingPipeline edited by Morris Swertz
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9:56 PM SnpCallingPipeline edited by Morris Swertz
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9:46 PM Blog: First raw reads in; Freerk and Morris Boston to get GATK running created by Morris Swertz

Oct 12, 2010:

11:52 AM ReadingMaterials edited by a.kanterakis
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Oct 7, 2010:

12:52 PM ImputationPipeline edited by a.kanterakis
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12:50 PM ImputationPipeline edited by a.kanterakis
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Oct 5, 2010:

11:25 AM ImputationPipeline edited by a.kanterakis
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Oct 4, 2010:

12:18 PM SnpCallingPipeline edited by freerkvandijk
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Sep 26, 2010:

8:17 PM WorkPlan edited by Yurii Aulchenko
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8:15 PM WorkPlan edited by Yurii Aulchenko
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8:01 PM MendelianQcPipeline edited by Yurii Aulchenko
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7:55 PM DeNovoVariationPipelineIdea created by Yurii Aulchenko
7:54 PM DeNovoVariationPipeline edited by Yurii Aulchenko
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7:42 PM MendelianQcPipelineIdea edited by Yurii Aulchenko
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7:39 PM TrioAwarePhasingPipeline edited by Yurii Aulchenko
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7:38 PM MendelianQcPipeline edited by Yurii Aulchenko
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7:37 PM ChipBasedQcPipeline edited by Yurii Aulchenko
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7:36 PM TrioAwarePhasingPipelineIdea created by Yurii Aulchenko
7:12 PM TrioAwarePhasingPipeline edited by Yurii Aulchenko
change in structure in accord with other pipelines (diff)
7:01 PM MendelianQcPipeline edited by Yurii Aulchenko
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7:01 PM MendelianQcPipeline edited by Yurii Aulchenko
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7:00 PM MendelianQcPipelineIdea created by Yurii Aulchenko
6:29 PM MendelianQcPipeline edited by Yurii Aulchenko
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6:18 PM ChipBasedQcPipeline edited by Yurii Aulchenko
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6:17 PM ChipBasedQcPipeline edited by Yurii Aulchenko
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6:16 PM ChipBasedQcPipeline edited by Yurii Aulchenko
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6:07 PM ChipBasedQcPipeline edited by Yurii Aulchenko
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6:04 PM ChipBasedQcPipeline edited by Yurii Aulchenko
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5:45 PM VcfGtDataFromat edited by Yurii Aulchenko
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5:44 PM VcfGtDataFormat created by Yurii Aulchenko
5:44 PM ChipBasedQcPipelineIdea edited by Yurii Aulchenko
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5:36 PM FactorsRelatedToSeqDataQuality created by Yurii Aulchenko
5:35 PM ChipBasedQcPipelineIdea edited by Yurii Aulchenko
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5:32 PM VcfGtDataFromat created by Yurii Aulchenko
5:30 PM ChipBasedQcPipelineIdea edited by Yurii Aulchenko
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5:29 PM ChipGtDataFormat created by Yurii Aulchenko
5:24 PM ChipBasedQcPipeline edited by Yurii Aulchenko
added 'burning questions' (diff)
5:14 PM ChipBasedQcPipelineIdea created by Yurii Aulchenko
5:03 PM ChipBasedQcPipeline edited by Yurii Aulchenko
re-structuring the document (diff)

Sep 25, 2010:

2:39 PM lib.zip attached to SnpAnnotationPipeline by Patrick Deelen
lib for AnnotateIntersectionOverview?
5:23 AM WikiStart edited by Morris Swertz
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4:59 AM SchematicOverview edited by Morris Swertz
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4:59 AM SchematicOverview edited by Morris Swertz
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Sep 24, 2010:

7:56 PM TrioAwarePhasingPipeline edited by Yurii Aulchenko
more details added (diff)
7:56 PM DataAnalysisPlan edited by Yurii Aulchenko
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7:55 PM DataAnalysisPlan edited by Yurii Aulchenko
note added at the end (diff)
7:35 PM MendelianQcPipeline edited by Yurii Aulchenko
few edits + moving TrioAwarePhasingPipeline to separate page (diff)
7:28 PM TrioAwarePhasingPipeline created by Yurii Aulchenko
3:03 PM DeNovoVariationPipeline edited by Yurii Aulchenko
format fix + small update (diff)
2:41 PM SchematicOverview edited by Yurii Aulchenko
eliminating duplicated line (diff)
2:36 PM ProjectOverview edited by Yurii Aulchenko
typos fix (diff)
2:30 PM ProjectOverview edited by Yurii Aulchenko
deleted duplicate line (diff)
8:12 AM WikiStart edited by Yurii Aulchenko
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8:08 AM WikiStart edited by Morris Swertz
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8:05 AM WikiStart edited by Morris Swertz
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Sep 23, 2010:

9:01 PM WikiStart edited by Morris Swertz
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6:28 PM AnnotateIntersectionOverview.zip attached to SnpAnnotationPipeline by Patrick Deelen
Netbeans project for Annotation tool

Sep 22, 2010:

7:52 PM TracPermissions edited by trac
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7:52 PM InterTrac edited by trac
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7:52 PM WikiHtml edited by trac
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7:52 PM TracUnicode edited by trac
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7:52 PM TracGuide edited by trac
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7:52 PM TracQuery edited by trac
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7:52 PM WikiRestructuredText edited by trac
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7:52 PM TracRoadmap edited by trac
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7:52 PM TracIni edited by trac
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7:52 PM TracAccessibility edited by trac
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7:52 PM TracNotification edited by trac
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7:52 PM InterWiki edited by trac
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7:52 PM TracRevisionLog edited by trac
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7:52 PM TracUpgrade edited by trac
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7:52 PM TracSupport edited by trac
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7:52 PM TracInterfaceCustomization edited by trac
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7:52 PM TracTickets edited by trac
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7:52 PM TracPlugins edited by trac
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7:52 PM TracChangeset edited by trac
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7:52 PM WikiRestructuredTextLinks edited by trac
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7:52 PM PageTemplates edited by trac
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7:52 PM WikiFormatting edited by trac
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7:52 PM TracReports edited by trac
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7:52 PM TracBackup edited by trac
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7:52 PM TracImport edited by trac
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7:52 PM TracSearch edited by trac
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7:52 PM TitleIndex edited by trac
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7:52 PM RecentChanges edited by trac
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7:52 PM SandBox edited by trac
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7:52 PM TracRss edited by trac
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7:52 PM WikiNewPage edited by trac
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7:52 PM TracModPython edited by trac
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7:52 PM TracTimeline edited by trac
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7:52 PM TracLinks edited by trac
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7:52 PM TracInstall edited by trac
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7:52 PM TracStandalone edited by trac
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7:52 PM TracSyntaxColoring edited by trac
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7:52 PM TracCgi edited by trac
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7:52 PM TracTicketsCustomFields edited by trac
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7:52 PM TracBrowser edited by trac
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7:52 PM TracWorkflow edited by trac
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7:52 PM TracEnvironment edited by trac
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7:52 PM TracModWSGI edited by trac
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7:52 PM CamelCase edited by trac
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7:52 PM TracRepositoryAdmin created by trac
7:52 PM WikiMacros edited by trac
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7:52 PM WikiProcessors edited by trac
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7:52 PM TracFastCgi edited by trac
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7:52 PM TracNavigation edited by trac
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7:52 PM TracAdmin edited by trac
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7:52 PM TracFineGrainedPermissions edited by trac
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7:52 PM TracWiki edited by trac
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7:52 PM WikiDeletePage edited by trac
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7:52 PM TracLogging edited by trac
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7:52 PM WikiPageNames edited by trac
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3:34 PM SnpCallingPipeline edited by Leon Mei
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3:23 PM SnpCallingPipeline edited by Leon Mei
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3:22 PM SnpCallingPipeline edited by Leon Mei
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3:22 PM SnpCallingPipeline edited by Leon Mei
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8:30 AM WikiStart edited by Morris Swertz
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Sep 21, 2010:

10:37 PM CoverageAnalysisPipeline edited by Barbera van Schaik
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8:45 PM CoverageAnalysisPipeline edited by Barbera van Schaik
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8:32 PM Coverage_Varscan_BaseCoverage.png attached to CoverageAnalysisPipeline by Barbera van Schaik
WF call SNPs with varscan, calculate coverage per 50kb and per base
8:31 PM MergeIndexSNPcall.png attached to CoverageAnalysisPipeline by Barbera van Schaik
WF Merge bam files and call SNPs with samtools
8:30 PM BWAparam.png attached to CoverageAnalysisPipeline by Barbera van Schaik
WF Alignment with BWA
8:30 PM splitFastq.png attached to CoverageAnalysisPipeline by Barbera van Schaik
8:30 PM bwaIndexDatabase.png attached to CoverageAnalysisPipeline by Barbera van Schaik
WF Create BWA index on database
8:29 PM CreateGridDirectory.png attached to CoverageAnalysisPipeline by Barbera van Schaik
WF CreateGridDirectory?
6:38 PM SnpAnnotationPipeline edited by Morris Swertz
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6:36 PM SnpAnnotationPipeline edited by Morris Swertz
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6:33 PM ImputationPipeline edited by Morris Swertz
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6:25 PM ImputationPipeline edited by Morris Swertz
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6:25 PM WikiStart edited by Morris Swertz
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6:05 PM SnpAnnotationPipeline edited by Morris Swertz
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6:01 PM ReadingMaterials edited by Morris Swertz
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6:00 PM Blog: Paper: Pelak et al (2010) PLoS Genet created by Morris Swertz
11:17 AM SnpAnnotationPipeline edited by Morris Swertz
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11:17 AM SnpAnnotationPipeline created by Morris Swertz
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